Installation¶
Cancerscope is available through pip. It supports all Python versions upwards of Python 2.7. It has been developed and tested with Python 2.7.14, 3.4, 3.5, 3.6, and 3.7.
Installing previous releases¶
To upgrade to a newer release, simply run the following bash command: .. code:: bash
pip install –upgrade cancerscope
To install a previous release, for example, v.0.42 (last supported release that used theano and lasagne): .. code:: bash
pip install cancerscope=0.42
Installing bleeding edge release¶
To install the latest release instead of the most recent stable release, you can install from source. Use the following bash commands:
>>> git clone https://github.com/jasgrewal/cancerscope.git
>>> cd cancerscope
>>> python setup.py install
Major version changes¶
Model setup using theano and lasagne .. versionchanged:: 0.42
Model setup using keras .. versionadded:: 1.0
Plotting option available for python 2.7 .. versionadded:: 0.0
Plotting option removed .. versionchanged:: 0.31